I have built my own theme, which integrates quite well with WooCommerce, but I want to know how to properly get rid of the notification on top of my theme that said my theme didn’t support WooCommerce / properly declare support (going a bit further than just clicking away the message).

2 s
Digging into the code that generates the notification (current_theme_supports('woocommerce')
) gives the answer: place add_theme_support( 'woocommerce' );
in your functions.php
simple!