Different results with Java’s digest versus external utilities

I have written a simple Java class to generate the hash values of the Windows Calculator file. I am using Windows 7 Professional with SP1. I have tried Java 6.0.29 and Java 7.0.03. Can someone tell me why I am getting different hash values from Java versus (many!) external utilities and/or websites? Everything external matches with each other, only Java is returning different results.

import java.io.File;
import java.io.FileInputStream;
import java.io.FileNotFoundException;
import java.io.IOException;
import java.util.LinkedHashMap;
import java.util.Map;
import java.util.Map.Entry;
import java.util.zip.CRC32;
import java.security.DigestInputStream;
import java.security.MessageDigest;
import java.security.NoSuchAlgorithmException;

public class Checksum 
{
    private static int size = 65536;
    private static File calc = new File("C:/Windows/system32/calc.exe");

    /*
        C:\Windows\System32\calc.exe (verified via several different utilities)
        ----------------------------
        CRC-32b = 8D8F5F8E
        MD5     = 60B7C0FEAD45F2066E5B805A91F4F0FC
        SHA-1   = 9018A7D6CDBE859A430E8794E73381F77C840BE0
        SHA-256 = 80C10EE5F21F92F89CBC293A59D2FD4C01C7958AACAD15642558DB700943FA22
        SHA-384 = 551186C804C17B4CCDA07FD5FE83A32B48B4D173DAC3262F16489029894FC008A501B50AB9B53158B429031B043043D2
        SHA-512 = 68B9F9C00FC64DF946684CE81A72A2624F0FC07E07C0C8B3DB2FAE8C9C0415BD1B4A03AD7FFA96985AF0CC5E0410F6C5E29A30200EFFF21AB4B01369A3C59B58


        Results from this class
        -----------------------
        CRC-32  = 967E5DDE
        MD5     = 10E4A1D2132CCB5C6759F038CDB6F3C9
        SHA-1   = 42D36EEB2140441B48287B7CD30B38105986D68F
        SHA-256 = C6A91CBA00BF87CDB064C49ADAAC82255CBEC6FDD48FD21F9B3B96ABF019916B    
    */    

    public static void main(String[] args)throws Exception {
        Map<String, String> hashes = getFileHash(calc);
        for (Map.Entry<String, String> entry : hashes.entrySet()) {
            System.out.println(String.format("%-7s = %s", entry.getKey(), entry.getValue()));
        }
    }

    private static Map<String, String> getFileHash(File file) throws NoSuchAlgorithmException, IOException {
        Map<String, String> results = new LinkedHashMap<String, String>();

        if (file != null && file.exists()) {
            CRC32 crc32 = new CRC32();
            MessageDigest md5 = MessageDigest.getInstance("MD5");
            MessageDigest sha1 = MessageDigest.getInstance("SHA-1");
            MessageDigest sha256 = MessageDigest.getInstance("SHA-256");

            FileInputStream fis = new FileInputStream(file);
            byte data[] = new byte[size];
            int len = 0;
            while ((len = fis.read(data)) != -1) {
                crc32.update(data, 0, len);
                md5.update(data, 0, len);
                sha1.update(data, 0, len);
                sha256.update(data, 0, len);
            }
            fis.close();

            results.put("CRC-32", toHex(crc32.getValue()));
            results.put(md5.getAlgorithm(), toHex(md5.digest()));
            results.put(sha1.getAlgorithm(), toHex(sha1.digest()));
            results.put(sha256.getAlgorithm(), toHex(sha256.digest()));
        }
        return results;
    }

    private static String toHex(byte[] bytes) {
        String result = "";
        if (bytes != null) {
            StringBuilder sb = new StringBuilder(bytes.length * 2);
            for (byte element : bytes) {
                if ((element & 0xff) < 0x10) {
                    sb.append("0");
                }
                sb.append(Long.toString(element & 0xff, 16));
            }
            result = sb.toString().toUpperCase();
        }
        return result;
    }

    private static String toHex(long value) {
        return Long.toHexString(value).toUpperCase();
    }

}